Current coverage of metapr2

metaPR2

This is a new project which aims at making publicly available a database of curated metabarcodes processed with dada2 and for which taxonomy is assigned with PR2.

The currently processed public data sets include:

  • Arctic Ocean - Polarstern expedition ARK-XXVII/3 - 2012
  • Arctic Ocean Survey - 2005-2011
  • Arctic Ocean, Beaufort Sea, MALINA cruise - 2009
  • Antarctic - Fieldes Bay - 2015
  • Baffin Bay - 2013
  • Bay of Naples - 2011
  • Biomarks
  • Blanes Time Series - 2004-2013
  • Central Arctic Ocean - 2012
  • Chukchi Sea - ICESCAPE - 2010
  • Fieldes Bay, Antarctic - 2013
  • Gdansk Gulf - 2012
  • Gdansk Gulf - 2012 Hapto
  • Gulf of Finland - 2012-2013
  • Malaspina expedition - surface - 2010-2011
  • Malaspina expedition - vertical profiles - 2010-2011
  • Nansen Basin - 2012
  • Nares Strait - 2014
  • Ocean Sampling Day - 2014 - V4 LGC
  • Ocean Sampling Day - 2014 - V4 LW
  • Ocean Sampling Day - 2015 - V4
  • Oslo fjord - 2009-2011
  • Tara Oceans - 2009-2012
  • White Sea - 2013-2015

Other non-public data sets include:

  • Cruises
    • Arctic - Green Edge project 2015-2016 in Baffin Bay (Ice Camp and Amundsen Cruise)
    • North West Pacific (data from Korea)
    • Brazil coastal lagoons
  • Time series
    • Roscoff (2009-2016)
    • Penzé estuary (2004-2012)

If you are interested please contact me.

Publications

Pelagophyte assemblages of the global ocean display low intraspecific diversity

Project Project

Talks