Research

Major research topics

  • Analysis of marine eukaryotic communities using metabarcoding (nuclear 18S rRNA, plastid 16S rRNA genes).
  • Diversity and oceanic distribution of marine phytoplankton, in particular green algae and pelagophytes.
  • Polar ohytoplankton communities and their adaptation to the long winter polar night.
  • Development of databases for the analysis of eukaryotic metabarcodes: PR2, pr2-primers and metaPR2 (in progress)

Current Collaborations

Projects

PhenoMap (2020-2023)

Characterize unknown phytoplankton species

Phytopol (2015-2021)

Phytoplankton survival in the polar night

TaxMarc (2018-2021)

Marine protists in a changing Arctic

Green Edge (2015-2016)

The Arctic Spring Bloom.

Collaborations

International collaborative projects.

RCC

Roscoff Culture Collection

PR2

18S rRNA sequence database

metaPR2

18S rRNA metabarcode database

Micro B3 (2012-2015)

Marine Microbial Biodiversity, Bioinformatics, Biotechnology

MaCuMBA (2012-2016)

Marine Microorganisms: Cultivation Methods for Improving their Biotechnological Applications

Malina (2008-2011)

The Beaufort Sea ecosystem.

Recent Publications

More publications

Metabarcoding dataset obtained during the 2014 MicroPolar cruises off Svalbard.
Earth System Science Data 13:4913-4928, 2021

A new species of cryptophyte isolated off both Brazil and Japan is described.
Protist (in press), 2021

A database of primer and primer sets for protists metabarcoding using the 18S rRNA gene.
Molecular Ecology Resources 22:168-179, 2021

We found no evidence of phago-mixotrophy in any M. polaris strain based on flow cytometric measurement of prey ingestion. In addition, in silico predictions reveal that members of the genus Micromonas lack a genetic signature of phagocytotic capacity..
Journal of Phycology 57, 435-446, 2021

Submitted Publications

More Publications

. Arctic phytoplankton spring bloom diversity across the marginal ice zone in Baffin Bay. Molecular Ecology (submitted) - Deposited to BioRxiv, 2022.

Preprint PDF Project Supplementary material

. The Green Edge cruise: Understanding the onset, life and fate of the Arctic phytoplankton spring bloom. Earth System Science Data Discussions, 1-47, 2022.

Preprint PDF Dataset Project

. metaPR2: a database of eukaryotic 18S rRNA metabarcodes with an emphasis on protists. Molecular Ecology Resources (submitted), 2022.

Preprint Code Dataset Project Project

. Global patterns and rates of habitat transitions across the eukaryotic tree of life. Nature Ecology and Evolution (submitted), 2021.

Preprint Code Dataset Project Project Supplementary material

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